M.L. Simpson, C.D. Cox, and G.S. Sayler, “Frequency Domain Analysis of Noise in Autoregulated Gene Circuits,” Proc. National Acad. Sci. USA, 100(8), 4551-4556, 2003.
C.D. Cox, G.D. Peterson, M. Allen, J.M. Lancaster, J.M. McCollum, D. Austin, L. Yan, G.S. Sayler and M.L. Simpson, “Analysis of Noise in Quorum Sensing,” Omics, 7(3), 317-334, 2003.
M.L. Simpson, C.D. Cox, G.D. Peterson, and G.S. Sayler “Engineering in the Biological Substrate: Information Processing in Genetic Circuits,” P. IEEE, 92(5) 848-863, 2004.
M.L. Simpson, C.D. Cox, and G.S. Sayler, “Frequency domain chemical Langevin analysis of stochasticity in gene transcriptional regulation,” J. Theor. Biol., 229(3): 383-394, 2004.
C.D. Cox, “Statistical Distributions of Uncertainty and Variability in Activated Sludge Model Parameters,” Water Environ. Res, 76 (6), 2004.
R.B. Robinson, C.D. Cox and K. Odom, “Identifying Outliers in Correlated Water Quality Data,” J. Environ. Engr., 131 (4), 651-657, 2005.
D. W. Austin, M. S. Allen, J. M. McCollum, R. D. Dar, J. R. Wilgus, G. S. Sayler, N. F. Samatova, C. D. Cox, and M. L. Simpson, “Gene Network Shaping of Inherent Noise Spectra,” Nature 439 (7076), 2006.
J.M. McCollum, G.D. Peterson, C.D. Cox, M. L. Simpson, N. F. Samatova , “The Sorting Direct Method for stochastic simulation of biochemical systems with varying reaction execution behavior”, Journal of Computational Biology and Chemistry, 30(1) 39-49, 2006.
C.D. Cox, J.M. McCollum, D.W. Austin, M.S. Allen, R.D. Dar, and M.L. Simpson, “Frequency domain analysis of noise in simple gene circuits,” Chaos, 16(2), Article # 026102, 2006
L. Yan, M.S. Allen, M.L. Simpson, G.S. Sayler, and C.D. Cox, “Direct quantification of N-(3-oxo-hexanoyl)-l-homoserine lactone in culture supernatant using a whole-cell bioreporter,” Microbial Methods 68, 40-45 2007.